Corona 300
March 7, 2020 was a Saturday. I woke up at 8am, which is as late as it gets, since the night before we watched Breathless and The Graduate back-to-back (the 1960s were a good decade for movies). Most of they was spent in visiting friends in downtown DC. They are a family of four in a tiny one-bedroom; we compared notes on where best to stash the extra flour, rice, pasta, and other staples Though not, funnily enough, toilet paper. we stocked up on expecting the inevitable. The inevitable came that night as we were heading out, when Mayor Bowser announced in a late news conference that yes indeed Washington DC had its first confirmed case of Covid-19: a man with no recent travel and no confirmed exposures, which is to say, there was already community spread. We got back to our apartment and closed the door; the next time that apartment would be empty of people again, as it usually had been on weekends and later summer afternoons before the pandemic, was more than five months later.
That was 300 days ago to the day, and as my favorite columnist and fellow millennial Janan Ganesh astutely noted, there were no grand lessons that these 300 days gave me, unless you count confirmation that humans can muddle their way through anything as a lesson. Harambe may have been killed in 2016, but 2020 was his year: a tragic, sensless event where everyone is responsible but no one is to blame — though I may be an exception in thinking this, since 2020 was the year of confirmation bias, the year of suppressing the opposing view points, the year of shaming. To complicate matters some more, it was also the year when crackpots and idiots joined into the Grand Coalition of Stoopid, expressing some points of view that maybe ought to be suppressed, and doing some things for which maybe they should be ashamed. Harambe indeed.
I finished the last year with a post about the great things that happened to me personally as the world stagnated in the 2010s. In the spirit of this year, I’ll finish with a list of failures instead, and I’ll do my best not to make it into a thinly veiled list of successes:
- I read far fewer books and watched far fewer movies than any year before.
- I wrote far fewer (medical) articles than planned.
- I wasted time on Twitter like never before (and, let’s hope, never again).
- I dropped more projects than ever before, including piano lessons, learning a new language, speed-completing the Rubik’s cube, and running in cold weather, among many others.
- I walked less than any other year since I started walking. This may be an exaggeration, but not by much.
- I commuted more by car than ever since moving to DC.
- I ordered more takeout than ever.
- And the one that hurts the most: I did not finish a single video game, or even play anything for more than 15 minutes, unless you count Good Sudoku which is truly a masterpiece of design and the highlight of the year. Yes, the highlight.
Blogroll
I, for one, am glad that blogs are making a comeback. Here are a few I’ve been reading for at least a few months, many of them for years, some for decades.
Applied philosophers
The only true philosophers of our time.
- Mathflaneur (by Nassim Taleb)
- Ribbonfarm (by Venkatesh Rao, who also has a newsletter of half-baked ideas he calls Ribbonfarm Studio)
The new scientists
People without major academic credentials who have interesting ideas about science.
- Alexey Guzey (also see Guzey’s Best of Twitter, and also see New Science)
- Applied Divinity Studies
- Astral Codex Ten (former Slate Star Codex)
- Fantastic Anachronism
- Gwern
- Nintil
The old scientists
People with major academic credentials and interesting ideas, something to teach, or both.
- I am Intramural (from the NIH Intramural Research Program)
- Statistical Modeling, Causal Inference, and Social Science by Andew Gelman
- Statistical Thinking by Frank Harrell
- Stephen Wolfram Writings
- The Mathematical Oncology Blog (see also This week in Mathematical Oncology)
The ludites
People against modernity of one sort or another.
- Axiom of Chance (Simon DeDeo, who does not seem to have a Twitter account)
- Patrick Rhone (who does have a Twitter account)
- Study Hacks (by Cal Newport, whose Twitter account, if real, has been abandoned years ago)
- Wrath of Gnon (who is in fact — and sadly — all Twitter)
People doing their own thing
Unclassifiable but exhilarating.
- Craig Mod (and on Twitter) who walks, makes books, and takes photos.
- Garden of Forking Paths (by Abe Callard, who watches movies)
- Rands in Repose (by Michael Lopp, who manages people)
- The Sephist (by Linus, who makes his own software tools)
- Thought Asylum (by Stephen Millard, who makes other people’s software tools more usable)
Apple enthusiasts
Some tips, a few tricks, many opinions.
- And now it’s all this
- Brett Terpstra (if you have a Mac and use it for more than just browsing the internet and answering email — not that there is anything wrong with that — Terpstra’s tools will save you days of work; he could easily have been slotted in the category above, but the Apple tag predates all and he is an Apple lifer)
- Daring Fireball (by John Gruber)
- Hypercritical (a sadly neglected blog by John Siracusa although what you should really check out is the podcast of the same name which has been out of production for years but still fun and relevant)
- Macdrifter
- Marco.org (by Marco Arment)
Finance-adjacent
Economists and investors, for the most part.
- Global Inequality (by Branko Milanović)
- Marginal Revolution (by Tyler Cowen and Alex Tabarrok who also wrote an excellent textbook in economics which I plan on reading some day, likely in retirement)
- Pseudoerasmus (the last post was in 2017 so I’m not holding out any hope, though he is on Twitter)
- The Rational Walk (see also Rational Reflections and the Twitter account)
- 10-K diver (as close to a blog that a Twitter account can get)
Journalist-cum-substackers
Former or current journalists who now earn some or all of their living by writing newsletters via Substack, which is slowly reinventing blogs (in the sense of reinventing the wheel, not actually making them better and in fact in many was making them much worse).
- Everything Studies (by John Nerst)
- Galaxy Brain (by Charlie Warzel)
- Insight (by Zeynep Tufekci, who is hands down the best journalist currently writing)
- Slow Boring (by Matthew Yglesias)
Company blogs
For when I really want to know when the next update is coming.
- Devonian Times, from the makers of my note-collecting tool of choice, DEVONthink
- The Omni Group, makers of OmniFocus (and OmniGraffle, which I don’t use often enough for it to be essential but which is fairly
- Wolfram Blog, from the makers of Mathematica
Some observations on Covid-19 from recent personal experience
- A few hours before I developed symptoms I had a negative screening nasal swab. By the time I got a positive test three days later the symptoms were well on their way to resolving. Good thing I didn’t believe that first result.
- What helped my not believing was that I had textbook Covid-19 which was moderate bordering on severe: fever 39.5°C (~103°F), chills, body aches, nasal congestion, rhinorhea, and a dry cough that was mild enough for me not to worry. But thankfully no anosmia.
- Read the preceding paragraph again. The nasal swab done just before I developed all those symptoms (and arguably while having chills - though I didn’t know they were chills at the time) was negative. Covid-19 testing is no better or worse than any other clinical test we have, which is to say caveat medicus.
- Considering our family’s practices I was surprised that it managed to get in and suspected it was one of the new strains. Lo and behold not 7 days later the UK strain was found in Maryland. I won’t know the sequence of the one that got me for a few more months, but I’d say it’s likely.
- Said practices did contribute to containment, as there seemed to be no spread outside of the household (there is a small asterisk there which I will leave for another time).
- The new strains being so much easier to get makes any delays in administering the vaccine that more deadly. This is hard to overstate: shots in arms now, doesn’t matter how and to whom.
- Speaking of shots, I did get my first dose a few days before the likely exposure, and plan on getting the second one as scheduled if available.
- Masks aren’t 100% effective, particularly in areas of high prevalence which is right now most of the world. The new strains shift the equilibrium even more. Holier-that-though memes about things being OK again if only people did what’s good for them (i.e. wore a mask) are misguided at best and quite likely counterproductive.
- Another misguided effort: a DC health professional telling the sole member of a large family without a fever to use a separate bathroom, wear a mask at all times and open all the (quite tall) windows of their 1200 sq ft 7th floor apartment. Hard to tell if this was more comical or dangerous.
- DC health professional’s misguided advice #2: to get everyone in the household tested. If mine was positive and four more people also have fevers do we really think they have something else? Why risk the tester’s exposure and waste reagents: count these people as positive and move on.
- But as things stand right now, if these household members don’t get tested they don’t count as positive. How prevalent is this situation, I wonder? Even with test availability not being a bottleneck I’d multiply the current counts by at least 2, probably 3 to get the real number (and I’m sure there are epidemiologists who have a more scientific explanation for why we should be doing that anyway).
- Symptoms in children seem to be no different than any other febrile viremia of childhood (and in fact may be slightly better as they didn’t seem to sap any of their energy, for better or worse). Does this make in-person school more or less safe? I can see both sides of the argument but if you thought children as asymptomatic carriers would be a big risk that risk is probably overblown as they do in fact get symptoms — they just won’t telegraph them.
- And if you are worried about long-term effects of Covid-19 in children, well, sure, but how is that different from long-term effects of any febrile viremia of childhood? I’m sure our parenting style will ruin their prospects enough that Covid-19 will be just a drop in the bucket.
- I have been getting lists of home remedies from people who should know better. This includes aspirin (as an anti-platelet agent, not an antipyretic), azithromycin (still!) zinc, turmeric, propolis. What I took: a little bit of APAP and a lot of H2O.
- I have a new appreciation for the gig workers, who are the unsung heroes of the pandemic. Tip your Dasher.
- 2021 is certainly off to an interesting start.
It's time to stop the foreign doctor kabuki
Residency application season has just started. Many of the applicants, a few of whom I know in person, will be foreign medical graduates, or FMGs, meaning that they are doctors who want to work in the US but are not US citizens. Most FMGs, but not all, will also be international medical graduates — IMGs — meaning that they have graduated from a non-US medical schools. Something called the Education Commision for Foreign Medical Graduates, or ECFMG, acts as their medical school when interacting with most of the sprawling US bureaucracy. These are our personae dramatis, if you will.
Disclosure: I am both an FMG and an IMG, and first began working in the US on an ECFMG-sponsored J1 visa.
America is a net importer of physicians, that much should obvious to anyone who’s ever been in an American hospital. The country depends on FMGs to keep the system running, get the less lucrative specialties, work in underserved areas, etc. Not so obvious is that most FMGs get to America by lying; ICE-approved, foreign-government sponsored lying for sure, but lying nonetheless.
Here are the lies FMGs tell when they come in: that their country has a need for doctors of such-and-such specialty, and/or that their government is sending them to the US for training in the said specialty, and/or that at the end of training they will go back to their country of origin to work in the (sub)specialty they came in to obtain. Those are the three postulates of the J1 physician exchange visa, the very name of which is also a lie as there is no exchange taking place: foreign doctors do come in, but no American doctors come out.
The postulates are incompatible with reality, and imply foreign government competence that just isn’t there in second and third-world countries. The transitioning and developing world, if you will. Because over there, no one is keeping statistics on specialist needs, and if they are there is actually a surplus, and if there isn’t they wouldn’t be able to afford the (sub)specialists once they come back, and if they could then they would be chosen by party or family lines, and you wouldn’t want them in your hospitals anyway.
So to get a J1 visa FMGs need to obtain a letter from their Ministry of Health or equivalent stating the above (the postulates, not the actual truth; I’m sure that in some of those countries people have gone to prison for saying the truth). But is there a functioning Ministry of Health? Does anyone there know that the letter they are supposed to provide about lending a medical graduate and wanting them back is a piece of kabuki theater, and not a commitment to employ that person if and when they come back? And because this letter is supposed to come in a sealed envelope directly from the Ministry to ECFMG: does anyone there speak English? So here are all those FMGs whose main reason to emigrate to America may have been to escape their kleptocratic governments, being dragged into a game of Whom do I bribe next? and Which newspaper do I threaten them with? In 2019 the correct answer is, for most countries of this sort, None. by the rules of the country they were hoping was less crooked than their own.
Which is fine for America, because it doesn’t care as long as it gets its steady stream of MDs one way or another. Only it should care because 1) the amount of person-hours wasted is on par with if not greater than the amount spent writing grants, and that one’s a whopper, 2) it relinquishes control over a part of its healthcare to foreign governments, and 3) it introduces an air of subterfuge and deceit at the very beginning of the FMG-USA relationship. I would like to think this is an aberration to be fixed, and not a preview of things to come in other areas of governance.
The process was probably fine 50 years ago, when both demands of the medical system and the influx of foreign doctors were but a fraction of the current monstrosity, when USMLE was taken on paper if you had to take it at all, when it wasn’t so obvious to a non-aligned physician whether they should go to the US or USSR (or Yugoslavia, for that matter) to get more training. But healthcare has changed and so has the world: it’s time do drop the pretense of an exchange, America, and be honest about what’s going on here.
What I believe that most people probably don’t (no data behind this, just the armchair)
The world in general, and the US in particular, is spending too much on goal-directed, targeted biomedical research while undervaluing both applied and theoretical physics. Picture Leonardo da Vinci drawing helicopters: that’s the modern-day cancer researcher. The universal cure for cancer — and there should be one, if humanity survives long enough to create it — will not come from an NIH grant. If grants are involved at all, it will be something initially funded by the National Science Foundation. The current system of funding (government, non-profit, biotech, you name it) is broken, and if you account for the opportunity cost it is a complete disaster. Each of these statements deserves at least a paragraph, but I am saving my carpal tunnels for a manuscript, an LOI, and a couple of protocols (oh, the irony).
In the meantime, a few things physician-scientists should do for the overall good:
- find causes and create better prevention strategies, because a look at the SEER database will tell you that it’s not just bad luck;
- eliminate barriers for administration of known curative therapies world-wide (do we really want to leave this to politicians and economists?);
- ensure rapid and honest evaluation of the many new treatments, procedures, and diagnostic/prognostic methods coming out of the biomedical behemoth.
How beneficial any of this would be for one’s career is a different question altogether, but let’s not get into incentives because RSI. I am also very open to opposing opinions, since my being wrong would make my life easier.
Level up
The next time someone asks me about books to read before residency, I will direct them here. You don’t have to be a medical trainee to benefit from these, but that period of anxious anticipation between match day and orientation is perfect for buffing your attributes.
How to read a book, by Mortimer J. Adler
What better way to start learning about learning than by reading a book about reading books?
The Farnam Street blog has a nice outline of the book’s main ideas. The same establishment is now hocking a $200 course on the same topic. It’s probably good, but at $10 the source material is slightly more affordable.
Getting things done, by David Allen
The first few months you will be neck-deep in scut work no matter what you do. After that, though, you will have to juggle patient care, research, didactics, fellowship/career planning, and piles of administrative drek—and that’s just inside the hospital. At the very least, this book will help you make time for laundry (and maybe some reading).
Thinking, fast and slow, by Daniel Kahneman
Superficially, similar knowledge to what is in these 400+ pages can be found in a few Wikipedia entries. But you would miss out on the how and why cognitive biases and heuristics are so important. Medicine and research are bias-driven endeavors, and not understanding them is not knowing real-world medicine.
Only three? Yes. If anything, the two and a half months between mid-March and July 1st won’t be enough to read them all with the attention they deserve. But you should try.
A yearly welcome
July 1st is when most US residency programs let their new interns loose after a week of corporate compliance training and ACGME-mandated talks about burnout.
If you are a medical student or a new intern, read this.
And this short post of mine still applies.
In addition, remember that it is easy to become very cynical very quickly. That is not the best of defense mechanisms, but it is better than substance abuse, domestic violence, or suicidal ideation. So, if you have to be cynical, do it up the chain of command, not down or laterally. That way you will avoid preconditioning medical students, observers, and your fellow interns. The senior residents will either support you in your jadedness, or will get to feel smug when they tell you that you are too young for that much cynicism. Your attendings should, ideally, teach you why you are wrong—though the younger they are the more likely it is they will behave like senior residents. So it’s a win for everyone, really, unless someone dings you for lack of professionalism.
Also, please remember to eat.
The overhead
There are many misnomers in American medical English. Patients walk into your clinic (from Greek kline, bed) to learn whether their scan was negative (good) or positive (bad). Those who have severe chronic pain may ask for their pain medicine (that relieve pain, not cause it), usually opioids. Some physicians would call them pain-seeking (though what they are seeking is relief). If they don’t get a prescription, they may rate their doctor poorly on a patient satisfaction survey, which is a big thing if you are into quality improvement. Quality improvement. There’s a misnomer.
Quality improvement in medicine is by definition limited to improving things you can measure, i.e. quantify, i.e. judge by criteria that are the ying to quality’s yang. Those measures may be valid or not, and may improve patients' lives, longevity, etc. (or not) but they are not quality. Because they are measures. Numbers. You know, quantities.
The movement is dangerous in at least three ways. Firstly and most obviously, many of the things being measured haven’t been validated in prospective trials. They are either (poor) conjecture—like tight glycemic control for type II diabetics assumed to help because of good outcomes in type ones (since, you know, a skinny teenager and a morbidly obese 60-year-old are similar that way.) Or they came out of a corporate think-tank cocaine-fueled outside-the-box brainstorming session, like patient satisfaction scores. Some speculation on my end there. They might have been on LSD.
Secondly, even if they were the best measures in the world, tying them to promotion and compensation would have the unintended consequence of having practitioners loose sight of all other aspects of medicine, including the patient. There are many accounts of how it can happen—this one from Dr. Centor comes readily to mind—but since (1) identifying and (2) addressing the patient’s actual problem is difficult to measure objectively, it is not one of the benchmarks.
And finally, wherever there are numbers and money, techniques will evolve to game the system. David Simon’s account of how this happens in law enforcement is applicable. Want fewer central line infections? Enact a policy not to draw blood cultures from central lines! Too many nosocomial urinary tract infections? Urinalyses on admission for everyone! Hospitals create teams with dozens of people whose only job is to find new and better ways to do this. And they have to—because everyone else is doing it. A depressing amount of time, money, and effort wasted because of pointless exercises of anonymous pencil-pushers.
This is how you get to a near 3000% increase in the number of hospital administrators over 30 years. I am sure they are all good people, with good salaries, but they are, for the most part, insignificant. An epiphenomenon induced by someone’s desire to turn healthcare into an industry, forgetting that the six sigma ideology that works so well for toaster ovens can’t be forced onto moist, squishy, and fragile humans.
Which is also a good working definition of quality improvement.
Talk therapy
“She makes the mistake of talking to patients.”
– Overheard from a fellow discussing the consult attending’s rounding habits
Is there such a thing as spending too much time with a patient? The question seems preposterous, when recent time motion studies showed that physicians in general, and residents in particular, clock embarrassingly few face-to-face minutes. The quote above was said with a wink and a nudge, but there are situations when it can be true, particularly if you talk to a patient—or get talked to—instead of having a conversation.
Two groups are at highest risk of talking too much—trainees and consultants. Many an internist remembers having to pick up the pieces after a consulting physician flew by the bedside to throw an unasked for opinion bomb. Think hematologists talking about insulin regimens, cardiologists about causes and treatment of back pain, or orthopedic surgeons about code status. “But one doctor said…” and a perplexed look is the usual outcome, more so if the consultant debated him or herself out loud.
Fellows are even more efficient sowers of confusion. Unlike some of their superiors, they still remember other fields well enough to a) have a valid opinion, and b) keep it to themselves. Where they are at highest risk for foot-in-mouth is the area of their future expertise—picking up just enough from the attendings to sound knowledgeable, yet not knowing enough to tell the patient what they don’t know. Even at later stages of training, a fellow’s best plan shared with the patient may tumble down when the attending gives a diametrically opposed recommendation. The common scenario is one in which there is no evidence, and clinical judgment rules. You can either not share your own view, or punctuate every conversation with “But we’ll see what my attending says.” More time wasted, and for nothing.
Patients themselves can be talkative, sometimes to their detriment. The reasons are many, and understandable: they have much to say about themselves—relevant to why they are in the hospital and not so much, they might not have anyone at home listening, they may have some level of delirium, dementia, or other cognitive disorder. Being able to identify such a person, and then knowing how to direct the conversation, is an unknown skill for most trainees and goes against today’s dogma of giving patients time to talk. No harm done to the chatty ones, but there are only so many hours in the day, and some of them should be spent thinking.
To be clear, we don’t have an epidemic of young doctors staying in the hospital until 2am while demented World War II veterans regail them with half-made up stories from Normandy. If only. But more isn’t always better, and physicians need to know when to speak up (to get their patient back on the topic), and when to stay quiet (not to overwhelm them with half-baked ideas).
Apple’s App Store rules, Dosegate edition
Now they are coming for the doctors (see What’s New in Version 3.0.5). The makers of MedCalc, the best medical calculator app out there, explained what happend in detail. Seeing that URL made me appreciate the developers even more. This was the rule they were supposedly infringing:
22.9 Apps that calculate medicinal dosages must be submitted by the manufacturer of those medications or recognized institutions such as hospitals, insurance companies, and universities.
Nevermind that many doctors view themselves as institutions—this is an idiotic rule. Is University of Baltimore, which has no biomedical science courses or programs, allowed to publish a drug dose calculator? Is GEICO?
The FDA has issued guidance for mobile medical apps. It specificaly allows calculators that use generally available formulas, and forbids apps which calculate radiation dosage, but does not mention drugs. Where, then, did this rule come from?
It is, of course, the same App store rules that allowed these pearls of quackery.
It’s madness, and it’s maddening.